1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g22158

Pir_g22158 (ATCOL5, COL5)


Aliases : ATCOL5, COL5

Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g22158
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cba_g10222 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os06g44450.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os08g15050.1 ATCOL5, COL5,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g09426 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34586 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 23 65
IPR000315 Znf_B-box 65 110
IPR010402 CCT_domain 321 363
No external refs found!