AT5G20290


Description : Ribosomal protein S8e family protein


Gene families : OG_01_0001661 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001661_tree ,
OG_02_0001408 (LandPlants) Phylogenetic Tree(s): OG_02_0001408_tree ,
OG_03_0002231 (SeedPlants) Phylogenetic Tree(s): OG_03_0002231_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G20290
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.35 Archaeplastida
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.31 Archaeplastida
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 Archaeplastida
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.12 Archaeplastida
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 Archaeplastida
Gb_28325 No alias component RPS8 of SSU proteome 0.24 Archaeplastida
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.39 Archaeplastida
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.27 Archaeplastida
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_14571g0010 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.04 Archaeplastida
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.07 Archaeplastida
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.48 Archaeplastida
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.1 Archaeplastida
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.55 Archaeplastida
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.37 Archaeplastida
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.44 Archaeplastida
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.23 Archaeplastida
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.41 Archaeplastida
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.44 Archaeplastida
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.12 Archaeplastida
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.21 Archaeplastida
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.19 Archaeplastida
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.18 Archaeplastida
Zm00001e024994_P001 No alias component RPS8 of SSU proteome 0.09 Archaeplastida
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.37 Archaeplastida
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.16 Archaeplastida
Zm00001e024999_P001 No alias component RPS8 of SSU proteome 0.15 Archaeplastida
Zm00001e025000_P003 No alias no hits & (original description: none) 0.13 Archaeplastida
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 LandPlants
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 LandPlants
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.1 LandPlants
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 LandPlants
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 LandPlants
Gb_28325 No alias component RPS8 of SSU proteome 0.24 LandPlants
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.39 LandPlants
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.26 LandPlants
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.02 LandPlants
MA_14571g0010 No alias component RPS8 of SSU proteome 0.13 LandPlants
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.04 LandPlants
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.06 LandPlants
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.48 LandPlants
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.1 LandPlants
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.52 LandPlants
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.37 LandPlants
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.42 LandPlants
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.23 LandPlants
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.41 LandPlants
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.44 LandPlants
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.12 LandPlants
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.21 LandPlants
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.19 LandPlants
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.18 LandPlants
Zm00001e024994_P001 No alias component RPS8 of SSU proteome 0.08 LandPlants
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.35 LandPlants
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.14 LandPlants
Zm00001e024999_P001 No alias component RPS8 of SSU proteome 0.15 LandPlants
Zm00001e025000_P003 No alias no hits & (original description: none) 0.13 LandPlants
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 SeedPlants
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 SeedPlants
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 SeedPlants
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.36 SeedPlants
Gb_28325 No alias component RPS8 of SSU proteome 0.24 SeedPlants
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.39 SeedPlants
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.26 SeedPlants
MA_14571g0010 No alias component RPS8 of SSU proteome 0.13 SeedPlants
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.41 SeedPlants
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.4 SeedPlants
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.12 SeedPlants
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.21 SeedPlants
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.19 SeedPlants
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.18 SeedPlants
Zm00001e024994_P001 No alias component RPS8 of SSU proteome 0.08 SeedPlants
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.35 SeedPlants
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.14 SeedPlants
Zm00001e024999_P001 No alias component RPS8 of SSU proteome 0.15 SeedPlants
Zm00001e025000_P003 No alias no hits & (original description: none) 0.11 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
MF GO:0003735 structural constituent of ribosome IBA Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006414 translational elongation IBA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit ISS Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 201
No external refs found!