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  5. Smo404055

Smo404055 (PACid_15407032)


Aliases : PACid_15407032

Description : 27.3.68 RNA.regulation of transcription.PWWP domain protein Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function. ENHANCER OF AG-4 2 (HUA2) CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313) BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT5G08230.1) Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0 Bacteria - 0 Metazoa - 736 Fungi - 347 Plants - 385 Viruses - 0 Other Eukaryotes - 339 (source: NCBI BLink). (original description: no original description)'


Gene families : OG_01_0003662 (Gene family) Phylogenetic Tree(s): OG0003662_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo404055
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT2G48160 No alias Tudor/PWWP/MBT domain-containing protein 0.02 Gene family
AT3G63070 No alias Tudor/PWWP/MBT domain-containing protein 0.05 Gene family
GSVIVT01011100001 No alias 27.3.68 RNA.regulation of transcription.PWWP domain... 0.04 Gene family
LOC_Os03g24339 Os03g0358000 27.3.68 RNA.regulation of transcription.PWWP domain... 0.02 Gene family
LOC_Os07g46180 Os07g0655500 27.3.68 RNA.regulation of transcription.PWWP domain... 0.02 Gene family
Solyc09g064840.3.1 Solyc09g064840.3 27.3.68 RNA.regulation of transcription.PWWP domain... 0.07 Gene family
Zm00001d029223 GRMZM2G156827 27.3.68 RNA.regulation of transcription.PWWP domain... 0.05 Gene family
Zm00001d047449 GRMZM2G021483 27.3.68 RNA.regulation of transcription.PWWP domain... 0.04 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000313 PWWP_dom 22 107
No external refs found!