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  5. Pir_g20406

Pir_g20406 (CRTISO, CCR2)


Aliases : CRTISO, CCR2

Description : carotenoid isomerase *(CrtISO) & original description: none


Gene families : OG0006448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20406
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00154100 CRTISO, CCR2,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
AT1G06820 CRTISO, CCR2 carotenoid isomerase 0.03 OrthoFinder output from all 47 species
Cre16.g651923 CRTISO, CCR2 Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 97 577
No external refs found!