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  5. Pir_g20398

Pir_g20398 (ATSRL1)


Aliases : ATSRL1

Description : not classified & original description: none


Gene families : OG0003543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20398

Target Alias Description ECC score Gene Family Method Actions
Ala_g04795 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07227 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27184 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G036200.1 ATSRL1, Ceric.07G036200 not classified & original description: pacid=50627179... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.50 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g07436 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36065 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06861 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g19184 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 14 164
IPR024767 PRP38_C 194 268
No external refs found!