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  5. Pir_g20342

Pir_g20342


Description : exoribonuclease *(RRP6L) & original description: none


Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20342

Target Alias Description ECC score Gene Family Method Actions
Adi_g106051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G064000.1 Ceric.03G064000 exoribonuclease *(RRP6L) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g36294 No alias exoribonuclease *(RRP6L) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16804 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g32890.1 LOC_Os07g32890 exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species
Ppi_g38978 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29907 No alias exoribonuclease *(RRP6L) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g018520.1.1 Solyc10g018520 exoribonuclease (RRP6L) 0.04 OrthoFinder output from all 47 species
Zm00001e004727_P001 Zm00001e004727 exoribonuclease (RRP6L) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR012588 Exosome-assoc_fac_Rrp6_N 34 114
IPR002562 3'-5'_exonuclease_dom 250 416
IPR002121 HRDC_dom 468 534
No external refs found!