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  5. Pir_g20163

Pir_g20163


Description : not classified & original description: none


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20163

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aob_g03190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11531 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 OrthoFinder output from all 47 species
Pnu_g31202 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 439
IPR002885 Pentatricopeptide_repeat 265 314
IPR002885 Pentatricopeptide_repeat 127 156
IPR002885 Pentatricopeptide_repeat 232 260
IPR002885 Pentatricopeptide_repeat 158 206
IPR002885 Pentatricopeptide_repeat 337 382
No external refs found!