Pir_g20012 (SVR1)


Aliases : SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: none


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20012

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021649 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Als_g08940 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.05 OrthoFinder output from all 47 species
Cba_g12885 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Ceric.20G017700.1 SVR1, Ceric.20G017700 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Ehy_g02338 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
LOC_Os03g05806.1 SVR1, LOC_Os03g05806 rRNA pseudouridine synthase (RsuA) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.02 OrthoFinder output from all 47 species
Sam_g49457 No alias plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Spa_g22396 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.05 OrthoFinder output from all 47 species
Zm00001e000423_P001 SVR1, Zm00001e000423 rRNA pseudouridine synthase (RsuA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 124 166
IPR006145 PsdUridine_synth_RsuA/RluA 187 329
No external refs found!