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  5. Pir_g19854

Pir_g19854 (LZF1, STH3, DBB3)


Aliases : LZF1, STH3, DBB3

Description : BBX class-IV transcription factor & original description: none


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g19854

Target Alias Description ECC score Gene Family Method Actions
AT1G78600 LZF1, STH3, DBB3 light-regulated zinc finger protein 1 0.02 OrthoFinder output from all 47 species
AT2G47890 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
Adi_g001540 STH not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058823 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11440 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19677 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19117 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62651.t2 Aspi01Gene62651 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01876 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z197300.1 LZF1, STH3,... BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g07621 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
LOC_Os02g39360.1 STH, LOC_Os02g39360 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g41560.2 STO, LOC_Os04g41560 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g45690.1 LOC_Os04g45690 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Len_g31145 STH BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21663 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07627 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11699 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18396 STH BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39847 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022562 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g12761 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016532_P001 LZF1, STH3,... transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 53 95
No external refs found!