Pir_g19845 (HSP93-V, DCA1,...)

Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1

Description : chaperone component *(ClpC) of chloroplast Clp-type protease complex & original description: none

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g19845

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00179810	CLPB4, CLPB-M,...	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
Als_g47841	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aob_g07406	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Aob_g21747	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g42026	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08864	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Aop_g16852	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cba_g04072	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cba_g20352	HSP93-V, DCA1,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.18G061200.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cre02.g091400	CLPB4, CLPB-M, HSP98.7	Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Len_g34142	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.01	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.02	OrthoFinder output from all 47 species
MA_229920g0010	CLPB3, CLPB-P, APG6	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.03	OrthoFinder output from all 47 species
Mp1g02560.1	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species
Pnu_g12830	CLPB3, CLPB-P, APG6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g19463	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Sam_g14950	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16602	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Sam_g17391	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19448	No alias	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g42976	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g011380.2.1	CLPB4, CLPB-M,...	Chaperone protein ClpB4, mitochondrial OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Spa_g07909	HSP93-V, DCA1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g10084	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10070	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Zm00001e008312_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species
Zm00001e040778_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	HCCA
MF	GO:0004784	superoxide dismutase activity	IEP	HCCA
MF	GO:0004797	thymidine kinase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	HCCA
MF	GO:0019136	deoxynucleoside kinase activity	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0019206	nucleoside kinase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041546	ClpA/ClpB_AAA_lid	439	540
IPR003959	ATPase_AAA_core	638	813
IPR004176	Clp_R_dom	186	237
IPR004176	Clp_R_dom	110	162
IPR003959	ATPase_AAA_core	301	430
IPR019489	Clp_ATPase_C	819	898

External Links

No external refs found!

Pir_g19845 (HSP93-V, DCA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation