AT5G18440

Description : CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink).

Gene families : OG_01_0005735 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005735_tree ,
OG_02_0009013 (LandPlants) Phylogenetic Tree(s): OG_02_0009013_tree ,
OG_03_0008597 (SeedPlants) Phylogenetic Tree(s): OG_03_0008597_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G18440
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
Gb_31525	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.05	Archaeplastida
LOC_Os01g59860.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	Archaeplastida
MA_10431482g0010	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	Archaeplastida
Mp2g25420.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	Archaeplastida
Solyc01g096920.3.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.06	Archaeplastida
Zm00001e019484_P003	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.03	Archaeplastida
LOC_Os01g59860.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	LandPlants
Mp2g25420.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	LandPlants
Solyc01g096920.3.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.05	LandPlants
Zm00001e019484_P003	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.02	LandPlants
LOC_Os01g59860.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	SeedPlants
Solyc01g096920.3.1	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.04	SeedPlants
Zm00001e019484_P003	No alias	NUFIP snoRNP rRNA methylation complex assembly factor	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000491	small nucleolar ribonucleoprotein complex assembly	IMP	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019496	NUFIP1_cons_dom	243	291

External Links

No external refs found!

AT5G18440

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation