Pir_g19454

Description : ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none

Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g19454

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00110960	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AMTR_s00041p00198080	evm_27.TU.AmTr_v1...	External stimuli response.biotic...	0.04	OrthoFinder output from all 47 species
GSVIVT01026271001	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.03	OrthoFinder output from all 47 species
LOC_Os02g07190.1	LOC_Os02g07190	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.02	OrthoFinder output from all 47 species
LOC_Os05g30010.1	LOC_Os05g30010	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.03	OrthoFinder output from all 47 species
MA_1171557g0010	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.03	OrthoFinder output from all 47 species
MA_15009g0010	PUB26	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus...	0.03	OrthoFinder output from all 47 species
Mp2g17510.1	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.01	OrthoFinder output from all 47 species
Msp_g15480	No alias	ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g32668	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g49606	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo413195	PUB26	External stimuli response.biotic...	0.02	OrthoFinder output from all 47 species
Zm00001e016398_P001	Zm00001e016398	ubiquitin E3 ligase (CERBERUS/LIN)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004649	poly(ADP-ribose) glycohydrolase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006282	regulation of DNA repair	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	1314	1348
IPR001680	WD40_repeat	1282	1305
IPR003613	Ubox_domain	568	638

External Links

No external refs found!

Pir_g19454

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation