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  5. Pir_g18629

Pir_g18629 (ATCFM2, CFM2)


Aliases : ATCFM2, CFM2

Description : not classified & original description: none


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g18629
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 ATCFM3A, CFM3A,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.05 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.07 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Aev_g01593 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
Ala_g27469 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06265 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.06 OrthoFinder output from all 47 species
Azfi_s1010.g095172 EMB1865 not classified & original description: CDS=6-3158 0.02 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.02 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.04 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.03 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g30519 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.03 OrthoFinder output from all 47 species
Gb_39217 EMB1865 CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Len_g08834 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55562 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g087250.4.1 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.01 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Spa_g04443 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38741 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004284_P002 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e011272_P001 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 725 804
IPR001890 RNA-binding_CRM 488 570
IPR001890 RNA-binding_CRM 920 1006
No external refs found!