Pir_g17839

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g17839

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00023120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT3G09630	No alias	Ribosomal protein L4/L1 family	0.04	OrthoFinder output from all 47 species
Aop_g12528	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.18G033500.1	Ceric.18G033500	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from all 47 species
Gb_00290	No alias	component RPL4 of LSU proteome component	0.01	OrthoFinder output from all 47 species
LOC_Os03g58204.1	LOC_Os03g58204	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os07g08330.1	LOC_Os07g08330	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g01521	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g16964	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pnu_g27556	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g04220	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004061	arylformamidase activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0070189	kynurenine metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	275	348
IPR002136	Ribosomal_L4/L1e	23	261

External Links

No external refs found!

Pir_g17839

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation