AT5G16640

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0005757 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005757_tree ,
OG_02_0003900 (LandPlants) Phylogenetic Tree(s): OG_02_0003900_tree ,
OG_03_0002486 (SeedPlants) Phylogenetic Tree(s): OG_03_0002486_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G16640
Cluster	HCCA: Cluster_198

Target	Alias	Description	ECC score	Gene Family Method
AT1G12300	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT1G63080	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT1G63130	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT1G63150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT1G63400	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT1G12300	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	LandPlants
AT1G63130	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	LandPlants
AT1G63150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	LandPlants
AT1G63080	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	SeedPlants
AT1G63150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	464	501
IPR002885	Pentatricopeptide_repeat	115	163
IPR002885	Pentatricopeptide_repeat	184	233
IPR002885	Pentatricopeptide_repeat	394	443
IPR002885	Pentatricopeptide_repeat	254	302
IPR002885	Pentatricopeptide_repeat	324	373

External Links

No external refs found!