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  5. Pir_g15994

Pir_g15994


Description : histone demethylase *(KDM5) & original description: none


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g15994

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00062020 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g055868 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g17236 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.28G058700.1 PKDM7D, Ceric.28G058700 histone demethylase *(PKDM7) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08688 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21285 PKDM7B, JMJ14 histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
GSVIVT01028351001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
Gb_09731 PKDM7D transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os05g23670.1 LOC_Os05g23670 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.03 OrthoFinder output from all 47 species
MA_97089g0010 PKDM7D Putative lysine-specific demethylase JMJ16... 0.03 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17312 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g008490.3.1 PKDM7D, Solyc06g008490 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003349 JmjN 31 64
IPR019787 Znf_PHD-finger 1740 1800
IPR019787 Znf_PHD-finger 247 293
IPR001606 ARID_dom 101 189
IPR013637 Lys_sp_deMease-like_dom 1551 1726
IPR013637 Lys_sp_deMease-like_dom 732 960
IPR013637 Lys_sp_deMease-like_dom 961 1151
IPR013637 Lys_sp_deMease-like_dom 1143 1435
IPR004198 Znf_C5HC2 629 681
IPR003347 JmjC_dom 419 535
No external refs found!