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  5. Pir_g15553

Pir_g15553


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g15553
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT1G48570 No alias zinc finger (Ran-binding) family protein 0.02 OrthoFinder output from all 47 species
Ala_g11397 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0661.g081440 No alias RNA editing factor *(OZ) & original description: CDS=90-3326 0.03 OrthoFinder output from all 47 species
Azfi_s0725.g083826 No alias RNA editing factor *(OZ) & original description: CDS=182-2308 0.02 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g22806 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31737 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01014166001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
MA_7499122g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_854125g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11918 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21486 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 559 585
IPR001876 Znf_RanBP2 599 626
IPR001876 Znf_RanBP2 481 508
IPR001876 Znf_RanBP2 517 544
No external refs found!