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  5. Pir_g15333

Pir_g15333


Description : component *(TRA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g15333

Target Alias Description ECC score Gene Family Method Actions
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.02 OrthoFinder output from all 47 species
Aev_g05547 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g20278 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Lfl_g36110 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Msp_g31775 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Nbi_g03878 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g39737 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905037 autophagosome organization IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000403 PI3/4_kinase_cat_dom 3541 3787
IPR046805 Tra1_ring 814 2657
IPR046807 Tra1_central 243 802
IPR003152 FATC_dom 3844 3873
IPR003151 PIK-rel_kinase_FAT 2801 3139
No external refs found!