Cpa|evm.model.tig00000402.16


Description : 27.1.1 RNA.processing.splicing Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. SC35-like splicing factor 33 (SR33)


Gene families : OG_01_0000558 (Gene family) Phylogenetic Tree(s): OG0000558_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cpa|evm.model.tig00000402.16
Cluster HCCA cluster: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.01 Gene family
AT3G13570 At-SCL30A, SCL30A SC35-like splicing factor 30A 0.02 Gene family
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.03 Gene family
AT5G18810 At-SCL28, SCL28 SC35-like splicing factor 28 0.01 Gene family
Cre13.g586916 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family
GSVIVT01001344001 No alias No description available 0.01 Gene family
GSVIVT01016562001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
GSVIVT01022010001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.01 Gene family
LOC_Os03g24890 Os03g0363800 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
LOC_Os12g38430 Os12g0572400 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.01 Gene family
Solyc01g005820.3.1 Solyc01g005820.3 No description available 0.03 Gene family
Zm00001d022243 GRMZM5G867185 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.01 Gene family
Zm00001d048609 GRMZM2G145725 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 12 80
No external refs found!