AT5G13960 (SDG33, SUVH4, KYP)


Aliases : SDG33, SUVH4, KYP

Description : SU(VAR)3-9 homolog 4


Gene families : OG_01_0000257 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000257_tree ,
OG_02_0003698 (LandPlants) Phylogenetic Tree(s): OG_02_0003698_tree ,
OG_03_0004446 (SeedPlants) Phylogenetic Tree(s): OG_03_0004446_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G13960
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00104700 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
AMTR_s00039p00046970 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AMTR_s00069p00076340 evm_27.TU.AmTr_v1... Enzyme classification.EC_2 transferases.EC_2.1... 0.05 Archaeplastida
LOC_Os01g70220.1 No alias class V/Su(var) histone methyltransferase component of... 0.04 Archaeplastida
Pp3c20_6140V3.1 No alias SU(VAR)3-9 homolog 4 0.03 Archaeplastida
Pp3c4_9720V3.1 No alias SU(VAR)3-9 homolog 4 0.02 Archaeplastida
Solyc02g094520.3.1 No alias class V/Su(var) histone methyltransferase component of... 0.07 Archaeplastida
Zm00001e004254_P001 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
Zm00001e009735_P001 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
Zm00001e027327_P003 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
Zm00001e031994_P003 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
AMTR_s00069p00076340 evm_27.TU.AmTr_v1... Enzyme classification.EC_2 transferases.EC_2.1... 0.03 LandPlants
Pp3c4_9720V3.1 No alias SU(VAR)3-9 homolog 4 0.02 LandPlants
Solyc02g094520.3.1 No alias class V/Su(var) histone methyltransferase component of... 0.05 LandPlants
AMTR_s00069p00076340 evm_27.TU.AmTr_v1... Enzyme classification.EC_2 transferases.EC_2.1... 0.03 SeedPlants
GSVIVT01032986001 No alias Chromatin organisation.histone modifications.histone... 0.02 SeedPlants
Solyc02g094520.3.1 No alias class V/Su(var) histone methyltransferase component of... 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006342 chromatin silencing RCA Interproscan
BP GO:0006346 DNA methylation-dependent heterochromatin assembly RCA Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
MF GO:0008327 methyl-CpG binding IDA Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0010216 maintenance of DNA methylation IDA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
MF GO:0010385 double-stranded methylated DNA binding IDA Interproscan
MF GO:0010428 methyl-CpNpG binding IDA Interproscan
MF GO:0010429 methyl-CpNpN binding IDA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0016571 histone methylation IDA Interproscan
BP GO:0016571 histone methylation RCA Interproscan
BP GO:0016572 histone phosphorylation RCA Interproscan
BP GO:0016579 protein deubiquitination RCA Interproscan
BP GO:0018022 peptidyl-lysine methylation IDA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0031048 heterochromatin assembly by small RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
MF GO:0046974 histone methyltransferase activity (H3-K9 specific) IDA Interproscan
BP GO:0051567 histone H3-K9 methylation IMP Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 337 438
IPR001214 SET_dom 457 594
IPR003105 SRA_YDG 148 306
No external refs found!