Smo402018 (PACid_15423429)


Aliases : PACid_15423429

Description : 27.4 RNA.RNA binding Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5. Controls alternative splicing of the developmental regulator ABI3. suppressor of abi3-5 (SUA) FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding INVOLVED IN: nuclear mRNA splicing, via spliceosome LOCATED IN: nucleus EXPRESSED IN: 23 plant structures EXPRESSED DURING: 14 growth stages CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876) BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2). & (chl4|521158 : 147.0


Gene families : OG_01_0004209 (Gene family) Phylogenetic Tree(s): OG0004209_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo402018
Cluster HCCA cluster: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT3G54230 SUA suppressor of abi3-5 0.03 Gene family
GSVIVT01013204001 No alias 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.04 Gene family
LOC_Os02g07070 Os02g0167500 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.02 Gene family
MA_188532g0010 No alias 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.01 Gene family
Solyc08g077310.3.1 Solyc08g077310.3 27.4 RNA.RNA binding Encodes a splicing factor SUA... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 167 237
No external refs found!