AT5G11880

Description : Pyridoxal-dependent decarboxylase family protein

Gene families : OG_01_0003036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003036_tree ,
OG_02_0004598 (LandPlants) Phylogenetic Tree(s): OG_02_0004598_tree ,
OG_03_0005888 (SeedPlants) Phylogenetic Tree(s): OG_03_0005888_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G11880
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00128310	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.aspartate...	0.03	Archaeplastida
LOC_Os02g24354.1	No alias	diaminopimelate decarboxylase	0.03	Archaeplastida
Mp1g04250.1	No alias	diaminopimelate decarboxylase	0.06	Archaeplastida
Pp3c23_16600V3.1	No alias	Pyridoxal-dependent decarboxylase family protein	0.07	Archaeplastida
Solyc01g109850.3.1	No alias	diaminopimelate decarboxylase	0.03	Archaeplastida
Zm00001e020909_P002	No alias	diaminopimelate decarboxylase	0.05	Archaeplastida
AMTR_s00014p00128310	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.aspartate...	0.02	LandPlants
LOC_Os02g24354.1	No alias	diaminopimelate decarboxylase	0.03	LandPlants
Mp1g04250.1	No alias	diaminopimelate decarboxylase	0.06	LandPlants
Pp3c23_16600V3.1	No alias	Pyridoxal-dependent decarboxylase family protein	0.07	LandPlants
Solyc01g109850.3.1	No alias	diaminopimelate decarboxylase	0.03	LandPlants
Zm00001e020909_P002	No alias	diaminopimelate decarboxylase	0.05	LandPlants
AMTR_s00014p00128310	evm_27.TU.AmTr_v1...	Amino acid metabolism.biosynthesis.aspartate...	0.02	SeedPlants
LOC_Os02g24354.1	No alias	diaminopimelate decarboxylase	0.03	SeedPlants
Solyc01g109850.3.1	No alias	diaminopimelate decarboxylase	0.03	SeedPlants
Zm00001e020909_P002	No alias	diaminopimelate decarboxylase	0.05	SeedPlants
Zm00001e039379_P001	No alias	diaminopimelate decarboxylase	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006553	lysine metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
MF	GO:0008836	diaminopimelate decarboxylase activity	IGI	Interproscan
MF	GO:0008836	diaminopimelate decarboxylase activity	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009085	lysine biosynthetic process	None	Extended
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	ISS	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046451	diaminopimelate metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR022644	De-COase2_N	106	352
IPR022643	De-COase2_C	353	443

External Links

No external refs found!

AT5G11880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation