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  5. Pir_g13055

Pir_g13055 (RKP)


Aliases : RKP

Description : E3 ubiquitin ligase *(RKP) & original description: none


Gene families : OG0003375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g13055

Target Alias Description ECC score Gene Family Method Actions
Adi_g011552 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01602 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13229 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17418 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G032900.1 RKP, Ceric.30G032900 E3 ubiquitin ligase *(RKP) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g09317 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00981 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18147 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g43380.1 RKP, LOC_Os07g43380 E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g05025 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
MA_61184g0010 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g15472 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08940 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g054140.4.1 RKP, Solyc04g054140 E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR045737 RKP_N 16 138
IPR003877 SPRY_dom 149 267
No external refs found!