Smo38494 (PACid_15415269)


Aliases : PACid_15415269

Description : 27.3.3 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Integrase-type DNA-binding superfamily protein FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity INVOLVED IN: regulation of transcription, DNA-dependent LOCATED IN: nucleus EXPRESSED IN: stem, fruit, root, seed CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471) BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G75490.1) Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0 Bacteria - 0 Metazoa - 736 Fungi - 347 Plants - 385 Viruses - 0 Other Eukaryotes - 339 (source: NCBI BLink). & (loc_os08g45110.1 : 130.0


Gene families : OG_01_0000000 (Gene family) Phylogenetic Tree(s): OG0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo38494
Cluster HCCA cluster: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G12980 ESR1, DRN Integrase-type DNA-binding superfamily protein 0.03 Gene family
AT1G24590 DRN-LIKE, ESR2,... DORNROSCHEN-like 0.02 Gene family
AT1G80580 No alias Integrase-type DNA-binding superfamily protein 0.04 Gene family
AT5G18560 PUCHI Integrase-type DNA-binding superfamily protein 0.06 Gene family
GSVIVT01032785001 No alias No description available 0.02 Gene family
GSVIVT01034563001 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
MA_10430231g0010 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.03 Gene family
MA_16778g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
MA_3073g0010 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.01 Gene family
MA_426919g0010 No alias 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.01 Gene family
Smo415574 PACid_15421062 No description available 0.03 Gene family
Solyc01g108240.3.1 Solyc01g108240.3 No description available 0.01 Gene family
Solyc03g118190.3.1 Solyc03g118190.3 No description available 0.04 Gene family
Solyc10g050960.2.1 Solyc10g050960.2 No description available 0.01 Gene family
Solyc10g050970.1.1 Solyc10g050970.1 No description available 0.01 Gene family
Zm00001d009103 GRMZM2G053503 No description available 0.03 Gene family
Zm00001d022461 GRMZM2G025062 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.04 Gene family
Zm00001d027686 No alias 17.5.2 hormone metabolism.ethylene.signal transduction... 0.02 Gene family
Zm00001d038584 GRMZM2G020016 No description available 0.02 Gene family
Zm00001d040651 GRMZM2G169382 No description available 0.02 Gene family
Zm00001d043204 GRMZM2G002119 No description available 0.06 Gene family
Zm00001d050948 GRMZM2G120401,... 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family
Zm00001d052102 GRMZM2G097081 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 23 74
No external refs found!