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  5. Pir_g12572

Pir_g12572


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12572
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Adi_g010386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18223 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30421 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30893 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55255 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58990 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06180 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g07638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29695 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75125 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75387 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G072000.1 Ceric.02G072000 not classified & original description: pacid=50584704... 0.03 OrthoFinder output from all 47 species
Ceric.05G020600.1 Ceric.05G020600 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G091700.1 Ceric.11G091700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G039900.1 Ceric.19G039900 not classified & original description: pacid=50575946... 0.03 OrthoFinder output from all 47 species
Ceric.23G026100.1 Ceric.23G026100 not classified & original description: pacid=50611257... 0.03 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g10610 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29239 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19629 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22449 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14001 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19389 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16921 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g18900 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 679 723
IPR002885 Pentatricopeptide_repeat 564 590
IPR002885 Pentatricopeptide_repeat 463 493
IPR002885 Pentatricopeptide_repeat 605 624
IPR002885 Pentatricopeptide_repeat 202 226
IPR002885 Pentatricopeptide_repeat 227 273
IPR002885 Pentatricopeptide_repeat 126 172
IPR002885 Pentatricopeptide_repeat 345 391
No external refs found!