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  5. Pir_g12553

Pir_g12553


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12553

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267930 evm_27.TU.AmTr_v1... U-box domain-containing protein 19 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.02 OrthoFinder output from all 47 species
AT3G46510 PUB13, ATPUB13 plant U-box 13 0.02 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06664 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07408 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g08869 PUB15 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38714 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17483 PUB15 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g00484 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19819 ATPUB17, PUB17 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene36187.t1 ATPUB17, PUB17,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43158.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene44181.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44188.t1 Aspi01Gene44188 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.05 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g02154 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12068 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02285 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22153 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_20805 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g08985 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g01206 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g31758 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g38088 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20708 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39748 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38113 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02760 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01237 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17363 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607 ATPUB17, PUB17 not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017096 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: CDS=1-1548 0.03 OrthoFinder output from all 47 species
Sam_g19747 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo73073 PUB39 U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14038 PUB8, B80 E3 ubiquiTin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000225 Armadillo 424 462
IPR003613 Ubox_domain 291 361
No external refs found!