AT5G11200


Description : DEAD/DEAH box RNA helicase family protein


Gene families : OG_01_0002910 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002910_tree ,
OG_02_0002914 (LandPlants) Phylogenetic Tree(s): OG_02_0002914_tree ,
OG_03_0002579 (SeedPlants) Phylogenetic Tree(s): OG_03_0002579_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11200
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 Archaeplastida
LOC_Os01g36890.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 Archaeplastida
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.08 Archaeplastida
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.06 Archaeplastida
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.03 Archaeplastida
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 Archaeplastida
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 LandPlants
LOC_Os01g36890.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 LandPlants
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 LandPlants
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.06 LandPlants
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.03 LandPlants
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 LandPlants
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 SeedPlants
Gb_04230 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.01 SeedPlants
LOC_Os01g36890.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 SeedPlants
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 SeedPlants
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IDA Interproscan
MF GO:0003697 single-stranded DNA binding IDA Interproscan
MF GO:0003725 double-stranded RNA binding IDA Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
MF GO:0016887 ATPase activity IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
IPR001650 Helicase_C 276 383
No external refs found!