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  5. Pir_g12237

Pir_g12237 (ATX1, SDG27)


Aliases : ATX1, SDG27

Description : class-III histone methyltransferase *(Trx) & original description: none


Gene families : OG0004303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004303_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00115800 SDG30, ATX2,... Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
AT1G05830 SDG30, ATX2 trithorax-like protein 2 0.06 OrthoFinder output from all 47 species
Adi_g013424 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Aev_g04886 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ala_g02683 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aob_g29671 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13213.t1 SDG30, ATX2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46680.t1 SDG30, ATX2,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033848 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ceric.20G024500.1 SDG30, ATX2,... class-III histone methyltransferase *(Trx) & original... 0.09 OrthoFinder output from all 47 species
Cre03.g197700 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g05840 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g21792 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Gb_04715 No alias Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Gb_27375 ATX1, SDG27 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
LOC_Os09g04890.1 SDG30, ATX2,... Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Lfl_g35891 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Mp7g16780.1 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Msp_g13971 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g17942 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g22261 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g098260.3.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g09107 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e033644_P001 SDG30, ATX2,... class III/Trithorax histone methyltransferase component... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 420 506
IPR003889 FYrich_C 624 701
IPR003888 FYrich_N 565 615
IPR001214 SET_dom 1068 1174
No external refs found!