Pir_g12213 (RSH1, ATRSH1, AT-RSH1)

Aliases : RSH1, ATRSH1, AT-RSH1

Description : ppGpp hydrolase *(RSH1) & original description: none

Gene families : OG0007704 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007704_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g12213

Target	Alias	Description	ECC score	Gene Family Method
AT4G02260	RSH1, ATRSH1, AT-RSH1	RELA/SPOT homolog 1	0.03	OrthoFinder output from all 47 species
Adi_g000749	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01958	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07422	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g13069	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0065.g035825	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: CDS=212-2167	0.05	OrthoFinder output from all 47 species
Cba_g03393	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.08G066100.1	RSH1, ATRSH1,...	ppGpp hydrolase *(RSH1) & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.58	RSH1, ATRSH1, AT-RSH1	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Dac_g23400	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02008	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10006	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g22160.1	RSH1, ATRSH1,...	Putative GTP diphosphokinase RSH1, chloroplastic...	0.03	OrthoFinder output from all 47 species
Len_g17577	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03474	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g07090.1	RSH1, ATRSH1, AT-RSH1	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Msp_g15202	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01441	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g03956	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19490	No alias	ppGpp hydrolase *(RSH1) & original description: none	0.07	OrthoFinder output from all 47 species
Solyc09g075390.4.1	RSH1, ATRSH1,...	Putative GTP diphosphokinase RSH1, chloroplastic...	0.04	OrthoFinder output from all 47 species
Solyc09g098580.3.1	RSH1, ATRSH1,...	Putative GTP diphosphokinase RSH1, chloroplastic...	0.03	OrthoFinder output from all 47 species
Spa_g12236	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	358	475
IPR004095	TGS	541	600

External Links

No external refs found!

Pir_g12213 (RSH1, ATRSH1, AT-RSH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation