Pir_g11843

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none

Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g11843

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00104760	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
Adi_g081371	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g29206	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Aob_g15719	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Dcu_g46980	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Len_g09763	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Lfl_g15816	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
MA_7343298g0010	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Mp4g01870.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Nbi_g36175	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Ore_g17449	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Pnu_g25670	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Ppi_g39270	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016191	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Sam_g16219	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Solyc08g067790.4.1	Solyc08g067790	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g04580	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Zm00001e024973_P001	Zm00001e024973	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005548	phospholipid transporter activity	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0007009	plasma membrane organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015914	phospholipid transport	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0017121	plasma membrane phospholipid scrambling	IEP	HCCA
MF	GO:0017128	phospholipid scramblase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0034204	lipid translocation	IEP	HCCA
BP	GO:0045332	phospholipid translocation	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0097035	regulation of membrane lipid distribution	IEP	HCCA
MF	GO:0140303	intramembrane lipid transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003618	TFIIS_cen_dom	227	312
IPR012921	SPOC_C	540	685

External Links

No external refs found!

Pir_g11843

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation