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  5. Pir_g11828

Pir_g11828 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11828

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.02 OrthoFinder output from all 47 species
Adi_g022844 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057512 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.14 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 756 788
IPR001313 Pumilio_RNA-bd_rpt 901 930
IPR001313 Pumilio_RNA-bd_rpt 833 858
IPR001313 Pumilio_RNA-bd_rpt 791 824
IPR001313 Pumilio_RNA-bd_rpt 863 898
IPR001313 Pumilio_RNA-bd_rpt 719 753
IPR001313 Pumilio_RNA-bd_rpt 936 969
IPR001313 Pumilio_RNA-bd_rpt 982 1011
IPR012940 NABP 352 714
No external refs found!