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  5. Pir_g11620

Pir_g11620


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11620
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00236350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g001121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07025 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aev_g07107 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Ala_g14907 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Als_g01479 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g43713 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g47204 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aob_g35125 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Aop_g06045 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Aspi01Gene64156.t1 Aspi01Gene64156 deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene68835.t1 Aspi01Gene68835 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene71512.t1 Aspi01Gene71512 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g08602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G056100.1 Ceric.05G056100 deadenylase component *(CAF1) of mRNA deadenylation... 0.09 OrthoFinder output from all 47 species
Dac_g02678 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Dcu_g01208 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Dcu_g51611 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Ehy_g00624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
GSVIVT01035897001 No alias Probable CCR4-associated factor 1 homolog 10... 0.04 OrthoFinder output from all 47 species
Gb_19103 No alias deadenylase component CAF1 of CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Len_g11620 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Len_g17479 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Lfl_g00761 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Lfl_g03678 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g24939 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_205414g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
MA_2937g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Msp_g09969 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Nbi_g01805 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Ore_g08887 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g27312 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Pnu_g17936 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Smo444748 No alias Probable CCR4-associated factor 1 homolog 6... 0.02 OrthoFinder output from all 47 species
Solyc11g045130.2.1 Solyc11g045130 Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Spa_g06339 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.15 OrthoFinder output from all 47 species
Tin_g02569 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 137
No external refs found!