AT5G09920 (RPB15.9, RPB15.9.9,...)


Aliases : RPB15.9, RPB15.9.9, NRPB4, ATRPB15.9

Description : RNA polymerase II, Rpb4, core protein


Gene families : OG_01_0002618 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002618_tree ,
OG_02_0002545 (LandPlants) Phylogenetic Tree(s): OG_02_0002545_tree ,
OG_03_0002264 (SeedPlants) Phylogenetic Tree(s): OG_03_0002264_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09920
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g02510.1 No alias subunit 4 of RNA polymerase 0.05 Archaeplastida
Smo144908 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
AMTR_s00061p00169370 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 LandPlants
LOC_Os02g02510.1 No alias subunit 4 of RNA polymerase 0.05 LandPlants
Smo144908 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 LandPlants
AMTR_s00061p00169370 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 SeedPlants
LOC_Os02g02510.1 No alias subunit 4 of RNA polymerase 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005665 RNA polymerase II, core complex IDA Interproscan
CC GO:0005665 RNA polymerase II, core complex IPI Interproscan
BP GO:0006366 transcription by RNA polymerase II RCA Interproscan
BP GO:0006366 transcription by RNA polymerase II TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005574 RPB4/RPC9 23 133
No external refs found!