Pir_g09832 (emb1507)


Aliases : emb1507

Description : RNA helicase *(Brr2) & original description: none


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g09832

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder output from all 47 species
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.03 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z134800.1 Ceric.1Z134800 not classified & original description: pacid=50597112... 0.06 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder output from all 47 species
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Msp_g15106 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021333 emb1507 RNA helicase *(Brr2) & original description: CDS=88-5190 0.03 OrthoFinder output from all 47 species
Sam_g18045 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36113 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
Zm00001e038727_P001 Zm00001e038727 DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1838 2155
IPR004179 Sec63-dom 1005 1307
IPR001650 Helicase_C 741 881
IPR011545 DEAD/DEAH_box_helicase_dom 1352 1520
IPR011545 DEAD/DEAH_box_helicase_dom 506 681
IPR041094 Brr2_helicase_PWI 267 376
No external refs found!