Pir_g09734 (CSB3, CLB4, GCPE, HDS, ISPG)

Aliases : CSB3, CLB4, GCPE, HDS, ISPG

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase & original description: none

Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g09734
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00175p00057810	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.02	OrthoFinder output from all 47 species
AT5G60600	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.04	OrthoFinder output from all 47 species
LOC_Os02g39160.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.04	OrthoFinder output from all 47 species
Len_g16087	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.04	OrthoFinder output from all 47 species
Lfl_g05647	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.04	OrthoFinder output from all 47 species
Mp5g09870.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.02	OrthoFinder output from all 47 species
Zm00001e015046_P001	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEA	Interproscan
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004588	IspG_bac-typ	87	728

External Links

No external refs found!