AT5G08300

Description : Succinyl-CoA ligase, alpha subunit

Gene families : OG_01_0004420 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004420_tree ,
OG_02_0005367 (LandPlants) Phylogenetic Tree(s): OG_02_0005367_tree ,
OG_03_0007756 (SeedPlants) Phylogenetic Tree(s): OG_03_0007756_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G08300
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00055000	evm_27.TU.AmTr_v1...	Cellular respiration.tricarboxylic acid...	0.04	Archaeplastida
Cpa\|evm.model.tig00000254.114	No alias	Cellular respiration.tricarboxylic acid...	0.02	Archaeplastida
Cre03.g193850	No alias	Cellular respiration.tricarboxylic acid...	0.12	Archaeplastida
GSVIVT01029337001	No alias	Cellular respiration.tricarboxylic acid...	0.06	Archaeplastida
LOC_Os07g38970.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.08	Archaeplastida
MA_10437252g0010	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.07	Archaeplastida
Mp7g15650.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.1	Archaeplastida
Pp3c14_8260V3.1	No alias	Succinyl-CoA ligase, alpha subunit	0.05	Archaeplastida
Smo405593	No alias	Cellular respiration.tricarboxylic acid...	0.04	Archaeplastida
Solyc01g007910.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.17	Archaeplastida
Solyc02g005350.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.05	Archaeplastida
Zm00001e010616_P002	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.29	Archaeplastida
Zm00001e035350_P001	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.1	Archaeplastida
AMTR_s00029p00055000	evm_27.TU.AmTr_v1...	Cellular respiration.tricarboxylic acid...	0.04	LandPlants
GSVIVT01029337001	No alias	Cellular respiration.tricarboxylic acid...	0.06	LandPlants
LOC_Os07g38970.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.08	LandPlants
MA_10437252g0010	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.06	LandPlants
Mp7g15650.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.1	LandPlants
Pp3c14_8260V3.1	No alias	Succinyl-CoA ligase, alpha subunit	0.05	LandPlants
Smo405593	No alias	Cellular respiration.tricarboxylic acid...	0.04	LandPlants
Solyc01g007910.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.16	LandPlants
Solyc02g005350.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.05	LandPlants
Zm00001e010616_P002	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.25	LandPlants
Zm00001e035350_P001	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.09	LandPlants
AMTR_s00029p00055000	evm_27.TU.AmTr_v1...	Cellular respiration.tricarboxylic acid...	0.04	SeedPlants
GSVIVT01029337001	No alias	Cellular respiration.tricarboxylic acid...	0.06	SeedPlants
LOC_Os07g38970.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.08	SeedPlants
MA_10437252g0010	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.05	SeedPlants
Solyc01g007910.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.15	SeedPlants
Solyc02g005350.3.1	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.05	SeedPlants
Zm00001e035350_P001	No alias	subunit alpha of succinyl-CoA ligase heterodimer	0.07	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004774	succinate-CoA ligase activity	None	Extended
MF	GO:0004776	succinate-CoA ligase (GDP-forming) activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009746	response to hexose	None	Extended
BP	GO:0009749	response to glucose	RCA	Interproscan
BP	GO:0009750	response to fructose	RCA	Interproscan
BP	GO:0009853	photorespiration	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	RCA	Interproscan
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043094	cellular metabolic compound salvage	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
MF	GO:0046872	metal ion binding	IDA	Interproscan
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0080129	proteasome core complex assembly	RCA	Interproscan
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003781	CoA-bd	55	148
IPR005811	CoA_ligase	201	321

External Links

No external refs found!

AT5G08300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation