Smo29617 (PACid_15412310)


Aliases : PACid_15412310

Description : 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family Dof-type zinc finger DNA-binding family protein CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851) BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G34140.1) Has 1076 Blast hits to 1071 proteins in 56 species: Archae - 0 Bacteria - 0 Metazoa - 0 Fungi - 0 Plants - 1071 Viruses - 0 Other Eukaryotes - 5 (source: NCBI BLink). & (p38564|mnb1a_maize : 103.0


Gene families : OG_01_0000024 (Gene family) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo29617
Cluster HCCA cluster: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT1G07640 OBP2 Dof-type zinc finger DNA-binding family protein 0.02 Gene family
AT5G62940 HCA2, DOF5.6 Dof-type zinc finger DNA-binding family protein 0.02 Gene family
GSVIVT01002242001 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
GSVIVT01021085001 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
GSVIVT01034189001 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
LOC_Os02g47810 Os02g0707200 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.01 Gene family
LOC_Os03g38870 Os03g0585600 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.01 Gene family
LOC_Os12g38200 Os12g0569900 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.01 Gene family
Solyc01g006993.1.1 Solyc01g006993.1 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Solyc01g006997.1.1 Solyc01g006997.1 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Solyc02g090220.3.1 Solyc02g090220.3 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Solyc10g009360.3.1 Solyc10g009360.3 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Zm00001d034163 GRMZM2G108865 16.5.1.2.3 secondary... 0.03 Gene family
Zm00001d035651 GRMZM2G179069 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.01 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003851 Znf_Dof 2 56
No external refs found!