Smo29563 (PACid_15411668)


Aliases : PACid_15411668

Description : 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family Encodes a zinc finger protein. OBF binding protein 4 (OBP4) CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851) BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1) Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0 Bacteria - 0 Metazoa - 736 Fungi - 347 Plants - 385 Viruses - 0 Other Eukaryotes - 339 (source: NCBI BLink). & (o24463|pbf_maize : 115.0


Gene families : OG_01_0000024 (Gene family) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo29563
Cluster HCCA cluster: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT1G51700 ADOF1, DOF1 DOF zinc finger protein 1 0.02 Gene family
AT2G37590 DOF2.4, ATDOF2.4 DNA binding with one finger 2.4 0.02 Gene family
AT2G46590 DAG2 Dof-type zinc finger DNA-binding family protein 0.04 Gene family
GSVIVT01031841001 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.03 Gene family
LOC_Os05g36900 Os05g0440000 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.03 Gene family
LOC_Os10g35300 Os10g0496000 No description available 0.02 Gene family
LOC_Os12g38200 Os12g0569900 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.03 Gene family
MA_172793g0010 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Zm00001d013724 GRMZM2G061292 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.02 Gene family
Zm00001d028625 No alias 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.04 Gene family
Zm00001d033325 GRMZM2G045678 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.03 Gene family
Zm00001d034163 GRMZM2G108865 16.5.1.2.3 secondary... 0.02 Gene family
Zm00001d043904 GRMZM2G327189 27.3.8 RNA.regulation of transcription.C2C2(Zn) DOF zinc... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003851 Znf_Dof 11 65
No external refs found!