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  5. Pir_g08942

Pir_g08942 (POK, TTD8, ATVPS52)


Aliases : POK, TTD8, ATVPS52

Description : component *(VPS52/POK) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0004170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g08942

Target Alias Description ECC score Gene Family Method Actions
Als_g22344 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Aob_g16191 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aop_g06543 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ceric.05G039600.1 POK, TTD8,... component *(VPS52/POK) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Cre08.g367200 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g01774 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Dde_g09340 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
GSVIVT01012102001 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
LOC_Os03g30460.1 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Lfl_g03261 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Smo235014 POK, TTD8, ATVPS52 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc02g094090.4.1 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Tin_g04119 POK, TTD8, ATVPS52 component *(VPS52/POK) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Zm00001e038047_P004 POK, TTD8,... component VPS52/POK of GARP/EARP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004417 hydroxyethylthiazole kinase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007258 Vps52 150 650
No external refs found!