AT5G07410


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000078 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000078_tree ,
OG_02_0009459 (LandPlants) Phylogenetic Tree(s): OG_02_0009459_tree ,
OG_03_0008011 (SeedPlants) Phylogenetic Tree(s): OG_03_0008011_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G07410
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
AT5G07430 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT5G61680 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01034985001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g19440.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os03g19610.1 No alias pectin methylesterase 0.07 Archaeplastida
LOC_Os11g43830.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.08 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.08 Archaeplastida
MA_10434773g0030 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c5_12770V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Solyc05g052120.4.1 No alias No annotation 0.07 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e002891_P001 No alias pectin methylesterase 0.11 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.06 Archaeplastida
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 LandPlants
AT5G07430 No alias Pectin lyase-like superfamily protein 0.05 LandPlants
AT5G61680 No alias Pectin lyase-like superfamily protein 0.03 LandPlants
Solyc05g052120.4.1 No alias No annotation 0.06 LandPlants
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 SeedPlants
AT5G07430 No alias Pectin lyase-like superfamily protein 0.05 SeedPlants
AT5G61680 No alias Pectin lyase-like superfamily protein 0.03 SeedPlants
Solyc05g052120.4.1 No alias No annotation 0.06 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0009505 plant-type cell wall ISS Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
CC GO:0048046 apoplast IDA Interproscan
CC GO:0090406 pollen tube IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 73 351
No external refs found!