Pir_g08617

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g08617

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00095p00146440	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.05	OrthoFinder output from all 47 species
AT2G47110	UBQ6	ubiquitin 6	0.05	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.05	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.04	OrthoFinder output from all 47 species
Ala_g22856	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g31252	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g04717	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g16439	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g20387	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g30723	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g64104	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g37486	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.08G035500.1	Ceric.08G035500	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.08G072700.1	Ceric.08G072700	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.21G057000.1	UBQ6, Ceric.21G057000	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.31G024800.1	UBQ6, Ceric.31G024800	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre06.g273600	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dac_g08496	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g27240	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g38726	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dde_g08812	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01023471001	UBQ10	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_41257	No alias	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os01g22490.1	UBQ6, LOC_Os01g22490	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g13170.1	LOC_Os03g13170	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os05g06770.1	UBQ6, LOC_Os05g06770	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os09g39500.1	LOC_Os09g39500	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Lfl_g23365	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp7g12760.1	UBQ6	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Msp_g34148	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g38968	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c10_25270V3.1	Pp3c10_25270	ubiquitin extension protein 1	0.03	OrthoFinder output from all 47 species
Pp3c12_5640V3.1	UBQ6, Pp3c12_5640	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Pp3c12_5760V3.1	UBQ6, Pp3c12_5760	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.04	OrthoFinder output from all 47 species
Pp3c24_430V3.1	Pp3c24_430	ubiquitin extension protein 1	0.03	OrthoFinder output from all 47 species
Pp3c4_19000V3.1	UBQ6, Pp3c4_19000	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Pp3c8_14230V3.1	UBQ6, Pp3c8_14230	ubiquitin 6	0.03	OrthoFinder output from all 47 species
Ppi_g24560	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g07360	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07364	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo111605	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g068045.1.1	UBQ6, Solyc01g068045	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc03g082570.4.1	Solyc03g082570	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc08g083120.3.1	Solyc08g083120	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc12g098940.2.1	UBQ6, Solyc12g098940	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc12g099025.1.1	UBQ6, Solyc12g099025	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g02055	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g29603	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g29979	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g28918	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e000962_P001	Zm00001e000962	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e009474_P001	Zm00001e009474	component RPL40 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e026237_P001	UBQ6, Zm00001e026237	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e028916_P001	UBQ6, Zm00001e028916	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	40	111
IPR001975	Ribosomal_L40e	115	164

External Links

No external refs found!

Pir_g08617

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation