Pir_g08580 (ATH1, ATATH1, ABCA2)

Aliases : ATH1, ATATH1, ABCA2

Description : subfamily ABCA transporter & original description: none

Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g08580
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
Aop_g09766	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0022.g016230	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: CDS=354-3422	0.03	OrthoFinder output from all 47 species
Len_g49231	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.04	OrthoFinder output from all 47 species
MA_10436531g0010	ABCA1, AtABCA1	ABC transporter A family member 1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g18500.1	ATH1, ATATH1, ABCA2	fatty acid transporter (ABCA). subfamily ABCA transporter	0.02	OrthoFinder output from all 47 species
Msp_g24475	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g36286	ATH15, ATATH15	subfamily ABCA transporter & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g25161	No alias	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g113070.4.1	ATH1, ATATH1,...	fatty acid transporter (ABCA). subfamily ABCA transporter	0.03	OrthoFinder output from all 47 species
Spa_g22954	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12605	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e004192_P001	ATH1, ATATH1,...	fatty acid transporter (ABCA). subfamily ABCA transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	564	708

External Links

No external refs found!

Pir_g08580 (ATH1, ATATH1, ABCA2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation