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  5. Pir_g08208

Pir_g08208 (RCA)


Aliases : RCA

Description : not classified & original description: none


Gene families : OG0001509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g08208
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00255830 RCA,... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
AT2G39730 RCA rubisco activase 0.07 OrthoFinder output from all 47 species
Adi_g007841 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Adi_g056176 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Adi_g060599 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Adi_g079810 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Aev_g12706 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Aev_g40934 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.06 OrthoFinder output from all 47 species
Als_g03717 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Aob_g33583 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.02 OrthoFinder output from all 47 species
Aop_g12628 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Aop_g12629 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000197 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.07 OrthoFinder output from all 47 species
Azfi_s0007.g011067 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Cba_g02574 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Cba_g15232 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Ceric.12G094300.1 RCA, Ceric.12G094300 ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Ceric.12G094500.1 RCA, Ceric.12G094500 ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Ceric.12G094700.1 RCA, Ceric.12G094700 ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Ceric.12G094800.1 RCA, Ceric.12G094800 ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Ceric.28G001900.1 RCA, Ceric.28G001900 ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.90 RCA Ribulose bisphosphate carboxylase/oxygenase activase,... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.91 RCA Ribulose bisphosphate carboxylase/oxygenase activase,... 0.03 OrthoFinder output from all 47 species
Cre04.g229300 RCA Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Dac_g08800 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Dac_g13179 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Dcu_g18051 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Dcu_g42046 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Dde_g08345 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Dde_g18636 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Ehy_g03611 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Ehy_g15758 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
GSVIVT01024910001 RCA Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
GSVIVT01034123001 RCA Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Gb_37968 RCA ATP-dependent activase involved in RuBisCo regulation 0.05 OrthoFinder output from all 47 species
LOC_Os11g47970.1 RCA, LOC_Os11g47970 ATP-dependent activase involved in RuBisCo regulation 0.06 OrthoFinder output from all 47 species
Len_g17744 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Len_g24593 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Lfl_g05580 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Lfl_g10261 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.06 OrthoFinder output from all 47 species
MA_10433855g0010 RCA ATP-dependent activase involved in RuBisCo regulation 0.03 OrthoFinder output from all 47 species
Mp3g03990.1 RCA ATP-dependent activase involved in RuBisCo regulation 0.08 OrthoFinder output from all 47 species
Msp_g06782 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.1 OrthoFinder output from all 47 species
Msp_g10333 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.07 OrthoFinder output from all 47 species
Nbi_g09928 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Nbi_g20650 RCA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25439 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Ore_g04065 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Ore_g20242 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.06 OrthoFinder output from all 47 species
Pir_g66480 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Pnu_g24705 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.06 OrthoFinder output from all 47 species
Ppi_g15847 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.08 OrthoFinder output from all 47 species
Ppi_g29886 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Sam_g09791 No alias ATP-dependent activase involved in RuBisCo regulation &... 0.02 OrthoFinder output from all 47 species
Sam_g28273 No alias ATP-dependent activase involved in RuBisCo regulation &... 0.02 OrthoFinder output from all 47 species
Sam_g28274 No alias ATP-dependent activase involved in RuBisCo regulation &... 0.02 OrthoFinder output from all 47 species
Sam_g28275 No alias ATP-dependent activase involved in RuBisCo regulation &... 0.03 OrthoFinder output from all 47 species
Sam_g38765 No alias ATP-dependent activase involved in RuBisCo regulation &... 0.02 OrthoFinder output from all 47 species
Smo268623 RCA Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Solyc10g086580.2.1 RCA, Solyc10g086580 ATP-dependent activase involved in RuBisCo regulation 0.09 OrthoFinder output from all 47 species
Spa_g05667 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Spa_g05668 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.05 OrthoFinder output from all 47 species
Spa_g29802 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Tin_g03996 RCA ATP-dependent activase involved in RuBisCo regulation &... 0.04 OrthoFinder output from all 47 species
Zm00001e020928_P001 RCA, Zm00001e020928 ATP-dependent activase involved in RuBisCo regulation 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 2 98
No external refs found!