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  5. Pir_g06935

Pir_g06935 (ATCFM2, CFM2)


Aliases : ATCFM2, CFM2

Description : not classified & original description: none


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g06935

Target Alias Description ECC score Gene Family Method Actions
Adi_g075406 EMB1865 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19644 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12969.t1 ATCFM3A, CFM3A,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g087250.4.1 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e004284_P002 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 261 343
IPR001890 RNA-binding_CRM 962 1047
IPR001890 RNA-binding_CRM 744 830
IPR001890 RNA-binding_CRM 552 636
No external refs found!