Smo270686 (PACid_15421830)


Aliases : PACid_15421830

Description : 29.2.1.2.2.6 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L6 Ribosomal protein L6 family protein FUNCTIONS IN: structural constituent of ribosome INVOLVED IN: translation LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, intracellular CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915) BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1) Has 744 Blast hits to 744 proteins in 281 species: Archae - 16 Bacteria - 0 Metazoa - 333 Fungi - 149 Plants - 117 Viruses - 0 Other Eukaryotes - 129 (source: NCBI BLink). & (loc_os04g39700.1 : 159.0


Gene families : OG_01_0002352 (Gene family) Phylogenetic Tree(s): OG0002352_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo270686
Cluster HCCA cluster: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G18540 No alias Ribosomal protein L6 family protein 0.27 Gene family
AT1G74050 No alias Ribosomal protein L6 family protein 0.04 Gene family
AT1G74060 No alias Ribosomal protein L6 family protein 0.19 Gene family
Cpa|evm.model.tig00021127.127 No alias 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.17 Gene family
Cre01.g011000 No alias 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.12 Gene family
GSVIVT01032041001 No alias 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.09 Gene family
GSVIVT01033532001 No alias 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.2 Gene family
LOC_Os02g37862 Os02g0591700 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.18 Gene family
LOC_Os04g39700 Os04g0473400 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.17 Gene family
MA_108607g0010 No alias 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.13 Gene family
Solyc04g014720.3.1 Solyc04g014720.3 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.17 Gene family
Solyc05g054070.3.1 Solyc05g054070.3 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.09 Gene family
Solyc11g012110.2.1 Solyc11g012110.2 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.13 Gene family
Zm00001d017047 GRMZM2G003384 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.2 Gene family
Zm00001d050920 GRMZM2G008748 29.2.1.2.2.6 protein.synthesis.ribosomal... 0.02 Gene family

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 78 173
No external refs found!