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  5. Pir_g05470

Pir_g05470


Description : not classified & original description: none


Gene families : OG0002966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002966_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g05470

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00036460 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G24740 No alias Protein of unknown function (DUF1162) 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.50 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g05849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09937 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019366001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_28330 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g13250.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g16704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR031646 VPS13_extend_chorein 146 378
IPR026854 VPS13-like_N 9 123
IPR009543 VPS13_VAB 2075 2311
IPR031645 VPS13_DH-like 2626 2798
IPR031642 VPS13_mid_RBG 625 871
No external refs found!