Smo270428 (PACid_15420260)


Aliases : PACid_15420260

Description : 27.3.20 RNA.regulation of transcription.G2-like transcription factor family, GARP Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling. phosphate starvation response 1 (PHR1) CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287) BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G20400.1) Has 1692 Blast hits to 1675 proteins in 68 species: Archae - 0 Bacteria - 2 Metazoa - 3 Fungi - 2 Plants - 1663 Viruses - 0 Other Eukaryotes - 22 (source: NCBI BLink). & (loc_os04g56990.1 : 149.0


Gene families : OG_01_0000018 (Gene family) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo270428
Cluster HCCA cluster: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT5G45580 No alias Homeodomain-like superfamily protein 0.02 Gene family
LOC_Os11g01480 Os11g0106100 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
LOC_Os12g01490 Os12g0105600 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Zm00001d024532 GRMZM2G123308 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 118 164
No external refs found!