AT5G03850


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG_01_0003817 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003817_tree ,
OG_02_0003626 (LandPlants) Phylogenetic Tree(s): OG_02_0003626_tree ,
OG_03_0004396 (SeedPlants) Phylogenetic Tree(s): OG_03_0004396_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G03850
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Cre12.g510450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
LOC_Os10g27174.1 No alias component RPS28 of SSU proteome 0.22 Archaeplastida
MA_10206328g0010 No alias component RPS28 of SSU proteome 0.03 Archaeplastida
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.1 Archaeplastida
Pp3c14_19610V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Archaeplastida
Pp3c17_13300V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.06 Archaeplastida
Pp3c5_6000V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.09 Archaeplastida
Smo170205 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc02g021400.2.1 No alias component RPS28 of SSU proteome 0.17 Archaeplastida
Solyc10g078630.2.1 No alias component RPS28 of SSU proteome 0.16 Archaeplastida
LOC_Os10g27174.1 No alias component RPS28 of SSU proteome 0.22 LandPlants
MA_10206328g0010 No alias component RPS28 of SSU proteome 0.03 LandPlants
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.1 LandPlants
Pp3c14_19610V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.05 LandPlants
Pp3c17_13300V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.06 LandPlants
Pp3c5_6000V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.09 LandPlants
Smo170205 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 LandPlants
Solyc02g021400.2.1 No alias component RPS28 of SSU proteome 0.17 LandPlants
Solyc10g078630.2.1 No alias component RPS28 of SSU proteome 0.16 LandPlants
LOC_Os10g27174.1 No alias component RPS28 of SSU proteome 0.22 SeedPlants
MA_10206328g0010 No alias component RPS28 of SSU proteome 0.03 SeedPlants
Solyc02g021400.2.1 No alias component RPS28 of SSU proteome 0.17 SeedPlants
Solyc10g078630.2.1 No alias component RPS28 of SSU proteome 0.16 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
MF GO:0003735 structural constituent of ribosome IBA Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006407 rRNA export from nucleus IBA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 4 63
No external refs found!