AT5G02860


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0002673 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002673_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0001479 (SeedPlants) Phylogenetic Tree(s): OG_03_0001479_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G02860
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.08 Archaeplastida
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.04 Archaeplastida
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.05 Archaeplastida
Solyc01g107320.3.1 No alias plastidial mRNA processing factor (PPR10) 0.06 Archaeplastida
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.07 Archaeplastida
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.07 LandPlants
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.06 LandPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 LandPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.04 LandPlants
Pp3c22_3230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Solyc01g107320.3.1 No alias plastidial mRNA processing factor (PPR10) 0.06 LandPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.09 LandPlants
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.04 SeedPlants
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
Solyc01g107320.3.1 No alias plastidial mRNA processing factor (PPR10) 0.06 SeedPlants
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.08 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 693 726
IPR002885 Pentatricopeptide_repeat 627 671
IPR002885 Pentatricopeptide_repeat 491 536
IPR002885 Pentatricopeptide_repeat 732 781
IPR002885 Pentatricopeptide_repeat 599 625
IPR002885 Pentatricopeptide_repeat 455 485
IPR002885 Pentatricopeptide_repeat 371 432
IPR002885 Pentatricopeptide_repeat 197 256
IPR002885 Pentatricopeptide_repeat 301 359
No external refs found!