Pir_g03371 (AtRH36, SWA3, RH36)

Aliases : AtRH36, SWA3, RH36

Description : SSU processome assembly factor *(SWA3) & original description: none

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g03371

Target	Alias	Description	ECC score	Gene Family Method
Ceric.17G072400.1	AtRH36, SWA3,...	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
LOC_Os03g46610.1	LOC_Os03g46610	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Len_g13474	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Mp4g20180.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e013281_P004	Zm00001e013281	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Zm00001e035639_P002	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	294	398
IPR011545	DEAD/DEAH_box_helicase_dom	83	251

External Links

No external refs found!